James R. Golden

Agentic PyMOL: Structural analysis in PyMOL through natural language

SpectraLoRA: A graph neural network to predict simulated and experimental Raman spectra

Glass Box UMAP: A Python package for interpretable UMAP via exact feature contributions

MSA-based pLMs encode evolutionary distance but don’t reliably exploit it

Equivalent linear mappings of deep networks are a promising path for biology

A quantitative-genetic decomposition of a neural network

From black box to glass box\: Making UMAP interpretable with exact feature contributions