Publications
97
Equivalent linear mappings of deep networks are a promising path for biology
AArcadia ScienceOct 29, 2025
From black box to glass box\: Making UMAP interpretable with exact feature contributions
AArcadia ScienceOct 29, 2025
26
A free, open-access library of high-quality organism illustrations for science communication
AArcadia ScienceSep 24, 2025
How do we balance labor and yield in high-throughput protein expression?
AArcadia ScienceSep 21, 2025
Mapping the spectrum of archaeal protein sequence–structure relationships
AArcadia ScienceAug 14, 2025
18
Automating identification and quantification of mouse scratch behavior in video recordings
AArcadia ScienceAug 14, 2025
10
Assembling and annotating an Asgard archaea and giant virus dataset of over 840,000 proteins
AArcadia ScienceAug 11, 2025
16
G–P Atlas\: A neural network framework for mapping genotypes to many phenotypes
AArcadia ScienceAug 7, 2025
Do protein language models understand evolution? Mixed evidence from ancestral sequences and ESM2
AArcadia ScienceJul 29, 2025
Modeling human monogenic diseases using the choanoflagellate *Salpingoeca rosetta*
AArcadia ScienceJun 22, 2025
Modeling human monogenic diseases using the tunicate *Ciona intestinalis*
AArcadia ScienceJun 22, 2025
15
A framework for modeling human monogenic diseases by deploying organism selection
AArcadia ScienceJun 22, 2025
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